You're right, all cylinders start over 54mm.
As there is only 0.011mm across the production tollerance for all three cylinders you're going to need a very very accurate vernier gauge indeed to measure them like that.
I guess that's why the cost of veniers runs from about a fiver up to several hundred pounds.
What really matters though is not the overall size or the letter on the cylinder / piston but the clearance which as I mentioned somewhere recently should (according to the book) never be under 0.039mm and has a service limit of 0.1mm.
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