Hi all-torque,
I'm not very experimented in the PGM but i supose is similar with most CDI units.
Have you checked the PGM ouput signal for spark?
You can use a LED indicator connected to the + wire in the coil to see if it's generating the ignition signal. If there is no signal the problem surely comes from the magnetic sensor at the flywheel, check the resistance between the cables in the flywheel sensor to see if it's faulty.
In the manual you'll see the correct values for the pickup sensor, i can't recall these values but maybe someone can.
I hope it's get solved quickly.
Cheers.